{ "_id": "6a328da93efcd9bda438e0bc", "Type": "Package", "Package": "season", "Title": "Seasonal Analysis of Health Data", "Version": "0.3.16.9000", "Authors@R": "c(\nperson(\"Adrian\", \"Barnett\", , \"a.barnett@qut.edu.au\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"https://orcid.org/0000-0001-6339-0374\")),\nperson(\"Peter\", \"Baker\", , \"p.baker1@uq.edu.au\", role = \"aut\",\ncomment = c(ORCID = \"https://orcid.org/0000-0002-1241-7263\")),\nperson(\"Nicholas\", \"Tierney\", , \"nicholas.tierney@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"https://orcid.org/0000-0003-1460-8722\"))\n)", "Description": "Routines for the seasonal analysis of health data,\nincluding regression models, time-stratified case-crossover,\nplotting functions and residual checks, see Barnett and Dobson\n(2010) ISBN 978-3-642-10748-1. Thanks to Yuming Guo for\nchecking the case-crossover code.", "License": "GPL (>= 3)", "URL": "https://github.com/agbarnett/season,\nhttps://agbarnett.github.io/season/", "BugReports": "https://github.com/agbarnett/season/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-GB", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "8.0.0", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://agbarnett.r-universe.dev", "Date/Publication": "2026-06-17 09:55:11 UTC", "RemoteUrl": "https://github.com/agbarnett/season", "RemoteRef": "HEAD", "RemoteSha": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-17 12:00:20 UTC", "User": "root" }, "Author": "Adrian Barnett [aut, cre] (ORCID:\n),\nPeter Baker [aut] (ORCID: ),\nNicholas Tierney [aut] (ORCID: )", "Maintainer": "Adrian Barnett ", "MD5sum": "e68c7e2ba3f341c994caf7675c562532", "_user": "agbarnett", "_type": "src", "_file": "season_0.3.16.9000.tar.gz", "_fileid": "2c81f211a3df00cc1834be0b727dcc31e56b904aaa9ad695438d96e67b6f6a0e", "_filesize": 2386801, "_sha256": "2c81f211a3df00cc1834be0b727dcc31e56b904aaa9ad695438d96e67b6f6a0e", "_created": "2026-06-17T12:00:20.000Z", "_published": "2026-06-17T12:06:01.393Z", "_distro": "noble", "_jobs": [ { "job": 81889351359, "time": 236, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7694760243" }, { "job": 81889351342, "time": 210, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7694752608" }, { "job": 81889351327, "time": 154, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7694780952" }, { "job": 81889351404, "time": 123, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7694757890" }, { "job": 81888062558, "time": 428, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7694671172" }, { "job": 81889351410, "time": 136, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7694725351" }, { "job": 81889351349, "time": 161, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7694732417" }, { "job": 81889351325, "time": 149, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7694731886" }, { "job": 81889351391, "time": 161, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7694732959" } ], "_buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/agbarnett/season", "_commit": { "id": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "author": "Adrian Barnett ", "committer": "Adrian Barnett ", "message": "website to readme\n", "time": 1781690111 }, "_maintainer": { "name": "Adrian Barnett", "email": "a.barnett@qut.edu.au", "login": "agbarnett", "bluesky": "@aidybarnett.bsky.social", "orcid": "0000-0001-6339-0374", "description": "Statistician", "uuid": 23534166 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "broom", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "coda", "role": "Imports" }, { "package": "generics", "role": "Imports" }, { "package": "ggplot2", "version": ">= 4.0.3", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "MASS", "version": ">= 7.3.65", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "survival", "version": ">= 3.8.6", "role": "Imports" }, { "package": "dlnm", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "flextable", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "mgcv", "role": "Suggests" }, { "package": "nimble", "role": "Suggests" }, { "package": "purrr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "stringr", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" }, { "package": "vdiffr", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "agbarnett", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 1 }, { "week": "2026-17", "n": 5 }, { "week": "2026-18", "n": 5 }, { "week": "2026-19", "n": 9 }, { "week": "2026-20", "n": 1 }, { "week": "2026-21", "n": 2 }, { "week": "2026-22", "n": 2 }, { "week": "2026-25", "n": 4 } ], "_tags": [], "_topics": [ "non-linear", "seasons", "time-series" ], "_stars": 3, "_contributors": [ { "user": "njtierney", "count": 190, "uuid": 6488485 }, { "user": "agbarnett", "count": 68, "uuid": 23534166 }, { "user": "olly98", "count": 10, "uuid": 88874839 } ], "_userbio": { "uuid": 23534166, "type": "user", "name": "Adrian Barnett", "followers": 82, "description": "Statistician" }, "_downloads": { "count": 418, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/season" }, "_mentions": 11, "_devurl": "https://github.com/agbarnett/season", "_pkgdown": "https://agbarnett.github.io/season/", "_searchresults": 91, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/season.html", "manual.pdf" ], "_homeurl": "https://github.com/agbarnett/season", "_realowner": "agbarnett", "_cranurl": true, "_releases": [ { "version": "0.2-2", "date": "2009-10-20" }, { "version": "0.2-3", "date": "2009-12-16" }, { "version": "0.2-4", "date": "2010-03-04" }, { "version": "0.2-5", "date": "2010-07-29" }, { "version": "0.2-6", "date": "2011-11-02" }, { "version": "0.3-1", "date": "2012-01-23" }, { "version": "0.3-2", "date": "2012-08-05" }, { "version": "0.3-3", "date": "2014-01-13" }, { "version": "0.3-4", "date": "2014-08-23" }, { "version": "0.3-5", "date": "2014-12-16" }, { "version": "0.3.6", "date": "2018-05-20" }, { "version": "0.3.7", "date": "2018-09-02" }, { "version": "0.3.8", "date": "2018-09-10" }, { "version": "0.3.9", "date": "2020-02-05" }, { "version": "0.3.10", "date": "2020-03-16" }, { "version": "0.3.11", "date": "2020-05-25" }, { "version": "0.3.12", "date": "2020-08-27" }, { "version": "0.3.13", "date": "2021-06-03" }, { "version": "0.3.14", "date": "2022-02-17" }, { "version": "0.3.15", "date": "2022-03-21" }, { "version": "0.3.16", "date": "2025-08-21" } ], "_exports": [ "aaft", "augment", "autoplot", "casecross", "ciPhase", "cosinor", "createAdj", "glance", "invyrfraction", "invyrfraction_chr", "invyrfraction_num", "monthglm", "monthmean", "nonlintest", "nscosinor", "peri", "phasecalc", "plot_circle", "plot_month", "plotCircle", "plotCircular", "plotMonth", "seasrescheck", "sinusoid", "third", "tidy", "wtest", "yrfraction" ], "_datasets": [ { "name": "AFL", "title": "Australian Football League (AFL) Players' Birthdays for the 2009 Season", "object": "AFL", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "CVD", "title": "Cardiovascular Deaths in Los Angeles, 1987-2000", "object": "CVD", "class": [ "data.frame" ], "fields": [ "year", "month", "yrmon", "cvd", "tmpd", "pop", "ndaysmonth", "adj" ], "rows": 168, "table": true, "tojson": true }, { "name": "CVDdaily", "title": "Daily Cardiovascular Deaths in Los Angeles, 1987-2000", "object": "CVDdaily", "class": [ "data.frame" ], "fields": [ "date", "cvd", "dow", "tmpd", "o3mean", "o3tmean", "Mon", "Tue", "Wed", "Thu", "Fri", "Sat", "month", "winter", "spring", "summer", "autumn" ], "rows": 5114, "table": true, "tojson": true }, { "name": "exercise", "title": "Exercise Data from Queensland, 2005-2007", "object": "exercise", "class": [ "data.frame" ], "fields": [ "id", "visit", "date", "year", "month", "bmi", "walking" ], "rows": 1302, "table": true, "tojson": true }, { "name": "indoor", "title": "Indoor Temperature Data", "object": "indoor", "class": [ "data.frame" ], "fields": [ "datetime", "living", "bedroom" ], "rows": 2021, "table": true, "tojson": true }, { "name": "schz", "title": "Schizophrenia Births in Australia, 1930-1971", "object": "schz", "class": [ "data.frame" ], "fields": [ "year", "month", "yrmon", "NBirths", "SczBroad", "SOI" ], "rows": 504, "table": true, "tojson": true }, { "name": "stillbirth", "title": "Stillbirths in Queensland, 1998-2000", "object": "stillbirth", "class": [ "data.frame" ], "fields": [ "dob", "year", "month", "yrmon", "seifa", "gestation", "stillborn" ], "rows": 60110, "table": true, "tojson": true } ], "_help": [ { "page": "aaft", "title": "Amplitude Adjusted Fourier Transform (AAFT)", "topics": [ "aaft" ] }, { "page": "AFL", "title": "Australian Football League (AFL) Players' Birthdays for the 2009 Season", "topics": [ "AFL" ] }, { "page": "augment.casecross", "title": "Augment", "topics": [ "augment.casecross" ] }, { "page": "autoplot.Cosinor", "title": "Plot the fitted sinusoid from a 'cosinor()' model", "topics": [ "autoplot.Cosinor" ] }, { "page": "autoplot.monthglm", "title": "Plot the monthly estimates from 'monthglm()'", "topics": [ "autoplot.monthglm" ] }, { "page": "autoplot.Monthmean", "title": "Plot the monthly mean estimates from 'monthmean()'", "topics": [ "autoplot.Monthmean" ] }, { "page": "autoplot.nonlintest", "title": "Plot the region of the third-order moment outside the test limits", "topics": [ "autoplot.nonlintest" ] }, { "page": "autoplot.nsCosinor", "title": "Plot the trend and seasonal estimates from 'nscosinor()'", "topics": [ "autoplot.nsCosinor" ] }, { "page": "autoplot.peri", "title": "Plot the periodogram from 'peri()'", "topics": [ "autoplot.peri" ] }, { "page": "autoplot.third", "title": "Plot the third-order moment from 'third()'", "topics": [ "autoplot.third" ] }, { "page": "casecross", "title": "Case-crossover Analysis to Control for Seasonality", "topics": [ "casecross" ] }, { "page": "ciPhase", "title": "Mean and Confidence Interval for Circular Phase", "topics": [ "ciPhase" ] }, { "page": "cosinor", "title": "Cosinor Regression Model for Detecting Seasonality in Yearly Data or Circadian Patterns in Hourly Data", "topics": [ "cosinor" ] }, { "page": "createAdj", "title": "Creates an Adjacency Matrix", "topics": [ "createAdj" ] }, { "page": "CVD", "title": "Cardiovascular Deaths in Los Angeles, 1987-2000", "topics": [ "CVD" ] }, { "page": "CVDdaily", "title": "Daily Cardiovascular Deaths in Los Angeles, 1987-2000", "topics": [ "CVDdaily" ] }, { "page": "exercise", "title": "Exercise Data from Queensland, 2005-2007", "topics": [ "exercise" ] }, { "page": "glance.casecross", "title": "Construct a single row summary \"glance\" of a model, fit, or other object", "topics": [ "glance.casecross" ] }, { "page": "indoor", "title": "Indoor Temperature Data", "topics": [ "indoor" ] }, { "page": "invyrfraction", "title": "Inverts a fraction of the year or hour to a useful time scale.", "topics": [ "invyrfraction", "invyrfraction_chr", "invyrfraction_num" ] }, { "page": "monthglm", "title": "Fit a GLM with Month", "topics": [ "monthglm" ] }, { "page": "monthmean", "title": "Calculate monthly mean or adjusted monthly mean for count data.", "topics": [ "monthmean" ] }, { "page": "nonlintest", "title": "Test of Non-linearity of a Time Series", "topics": [ "nonlintest" ] }, { "page": "nscosinor", "title": "Non-stationary Cosinor", "topics": [ "nscosinor" ] }, { "page": "peri", "title": "Periodogram", "topics": [ "peri" ] }, { "page": "phasecalc", "title": "Phase from Cosinor Estimates", "topics": [ "phasecalc" ] }, { "page": "plot_circle", "title": "Circular plot of monthly values (ggplot2)", "topics": [ "plot_circle" ] }, { "page": "plot_month", "title": "Plot a response by month (ggplot2)", "topics": [ "plot_month" ] }, { "page": "plot.Cosinor", "title": "Plot the Results of a Cosinor", "topics": [ "plot.Cosinor" ] }, { "page": "plot.monthglm", "title": "Plot of Monthly Estimates", "topics": [ "plot.monthglm" ] }, { "page": "plot.Monthmean", "title": "Plot of Monthly Mean Estimates", "topics": [ "plot.Monthmean" ] }, { "page": "plot.nonlintest", "title": "Plot the Results of the Non-linear Test", "topics": [ "plot.nonlintest" ] }, { "page": "plot.nsCosinor", "title": "Plot the Results of a Non-stationary Cosinor", "topics": [ "plot.nsCosinor" ] }, { "page": "plotCircle", "title": "Circular Plot", "topics": [ "plotCircle" ] }, { "page": "plotCircular", "title": "Circular Plot Using Segments", "topics": [ "plotCircular" ] }, { "page": "plotMonth", "title": "Plot Results by Month", "topics": [ "plotMonth" ] }, { "page": "print.casecross", "title": "Print the Results of a Case-Crossover Model", "topics": [ "print.casecross" ] }, { "page": "print.monthglm", "title": "Prints basic results from 'monthglm()'", "topics": [ "print.monthglm" ] }, { "page": "print.Monthmean", "title": "Print the Results from Monthmean", "topics": [ "print.Monthmean" ] }, { "page": "print.nonlintest", "title": "Print the Results of the Non-linear Test", "topics": [ "print.nonlintest" ] }, { "page": "print.nsCosinor", "title": "Print the Results of a Non-stationary Cosinor", "topics": [ "print.nsCosinor" ] }, { "page": "print.summary.monthglm", "title": "Printing a summary of a month.glm", "topics": [ "print.summary.monthglm" ] }, { "page": "print.summary.nscosinor", "title": "Print a summary of an 'nscosinor()' object", "topics": [ "print.summary.nsCosinor" ] }, { "page": "schz", "title": "Schizophrenia Births in Australia, 1930-1971", "topics": [ "schz" ] }, { "page": "seasrescheck", "title": "Seasonal Residual Checks", "topics": [ "seasrescheck" ] }, { "page": "sinusoid", "title": "Plot a Sinusoid", "topics": [ "sinusoid" ] }, { "page": "stillbirth", "title": "Stillbirths in Queensland, 1998-2000", "topics": [ "stillbirth" ] }, { "page": "summary.casecross", "title": "Summary of the Results of a Case-crossover Model", "topics": [ "summary.casecross" ] }, { "page": "summary.Cosinor", "title": "Print and summary methods for a Cosinor", "topics": [ "print.Cosinor", "print.summary.Cosinor", "summary.Cosinor" ] }, { "page": "summary.monthglm", "title": "Summary for a Monthglm", "topics": [ "summary.monthglm" ] }, { "page": "summary.nsCosinor", "title": "Summary for a Non-stationary Cosinor", "topics": [ "summary.nsCosinor" ] }, { "page": "third", "title": "Third-order Moment", "topics": [ "third" ] }, { "page": "tidy.casecross", "title": "Tidy a casecross object", "topics": [ "tidy.casecross" ] }, { "page": "wtest", "title": "Walter and Elwood's Test of Seasonality", "topics": [ "wtest" ] }, { "page": "yrfraction", "title": "Fraction of the Year", "topics": [ "yrfraction" ] } ], "_pkglogo": "https://github.com/agbarnett/season/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/agbarnett/season/raw/HEAD/README.md", "_rundeps": [ "backports", "broom", "cli", "coda", "cpp11", "dplyr", "farver", "generics", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "pillar", "pkgconfig", "purrr", "R6", "RColorBrewer", "rlang", "S7", "scales", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "month-vignette.Rmd", "filename": "month-vignette.html", "title": "Modelling monthly data", "author": "Adrian Barnett", "engine": "knitr::rmarkdown", "headings": [ "Monthly data", "Month as a fixed effect", "Month as a random effect", "Month as a correlated random effect" ], "created": "2026-05-04 22:09:54", "modified": "2026-05-12 23:06:24", "commits": 4 }, { "source": "season-vignette.Rmd", "filename": "season-vignette.html", "title": "Season tutorial", "author": "Adrian Barnett", "engine": "knitr::rmarkdown", "headings": [ "Seasonal death data", "Plot of deaths over time", "Daily deaths and temperatures plot", "Regression model", "Confidence intervals", "Plot of the non-linear association between temperature and death", "Plot of the temperature and death association averaging over all lags", "Plot of the lagged temperature and death association for a specific temperature", "Non-stationary seasonal patterns", "Back transforming the phase", "Testing for non-linearity in time series" ], "created": "2018-09-02 09:38:17", "modified": "2026-05-12 23:06:24", "commits": 9 } ], "_score": 7.640282629696681, "_indexed": true, "_nocasepkg": "season", "_universes": [ "agbarnett" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.16.9000", "date": "2026-06-17T12:03:32.000Z", "distro": "noble", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "47309a91fb93d5e8b251394cbed6f0cddbfbd6b0424f18809ccb9870587247fb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" }, { "r": "4.6.0", "os": "linux", "version": "0.3.16.9000", "date": "2026-06-17T12:03:15.000Z", "distro": "noble", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "860cbf59344db880d5c5ec0f0266d9f65a3b2466ba65a3edfb9418bcaaf07e06", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" }, { "r": "4.5.3", "os": "mac", "version": "0.3.16.9000", "date": "2026-06-17T12:04:40.000Z", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "09f6217769536423e478f1fe8bf2a4ef4a38b00c7a4e4c4d923ba7ebcc65cc6a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" }, { "r": "4.6.0", "os": "mac", "version": "0.3.16.9000", "date": "2026-06-17T12:03:48.000Z", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "46cc6f93711e9fdf259f2bd449454ff068301bfc555adcfb6ad3b8b361a9e341", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.16.9000", "date": "2026-06-17T12:03:03.000Z", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "a68920bb4a2e17083f74a7bfb06a61c72ac0292ee73f63c84e2e17850202da82", "status": "success", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" }, { "r": "4.7.0", "os": "win", "version": "0.3.16.9000", "date": "2026-06-17T12:01:50.000Z", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "2a482df96ce19b0f9fd031d7f58b3bbd57f9e91bb2fd172eb224c73e6eaecb6d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" }, { "r": "4.5.3", "os": "win", "version": "0.3.16.9000", "date": "2026-06-17T12:01:53.000Z", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "43bd281b70677a9f7ed4b0aa3fa570a7698588bc92e330b2becf06fdd360efda", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" }, { "r": "4.6.0", "os": "win", "version": "0.3.16.9000", "date": "2026-06-17T12:02:00.000Z", "commit": "c3b57ee382ab928abd41e35b564e7f967c37ec3e", "fileid": "2ff9d45f7fcc952caa16ae2d26eef2b311ed6d615379ead7c2c20ef98c24d1dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/agbarnett/actions/runs/27686981912" } ] }